Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs62358948 chr5:54377731 A/G 1.43E-11 174 21.08 28.03 18.47 KM Plot
UCEC rs62358950 chr5:54387652 A/G 1.54E-7 173 21.1 27.78 20.33 KM Plot
UCEC rs62360382 chr5:54414742 C/T 1.56E-7 173 21.6 25.8 20.33 KM Plot
UCEC rs62360383 chr5:54418203 G/A 1.1E-7 172 21.55 25.8 20.33 KM Plot
UCEC rs62360385 chr5:54429680 T/C 2.79E-7 173 21.55 24.07 20.33 KM Plot
UCEC rs62360386 chr5:54431921 G/A 2.79E-7 173 21.55 24.07 20.33 KM Plot
UCEC rs62376791 chr5:143550464 A/G 7.23E-9 172 22.57 30.62 2.45 KM Plot
UCEC rs62376819 chr5:143574974 C/G 6.59E-9 172 22.57 32.2 2.45 KM Plot
UCEC rs62401248 chr5:143581517 T/C 5.68E-9 173 22.57 30.62 2.45 KM Plot
UCEC rs6433816 chr2:180809317 G/C 0.000141 173 13.63 22.9 22.57 KM Plot
UCEC rs6433818 chr2:180810264 A/T 0.000141 173 13.63 22.9 22.57 KM Plot
UCEC rs6433820 chr2:180837722 T/C 0.000149 173 13.63 22.15 22.6 KM Plot
UCEC rs6433821 chr2:180837806 T/A 0.000149 173 13.63 22.15 22.6 KM Plot
UCEC rs6436044 chr2:219080503 A/G 0.000133 173 4.5 17.53 22.85 KM Plot
UCEC rs6453396 chr5:77785387 T/C 3.21E-5 172 18.37 26.27 21.55 KM Plot